CHANGELOG

Version 1.0.0

  • Version bump. Starting here we will employ semantic versioning
  • Added version script to get version from project

Version 0.1.0

  • Started project over to setup for Continuous Integration testing
  • Added rename_fasta that can rename fasta sequence identifiers based on a input rename file
  • Added travis, coveralls, readthedocs
  • Added amos file parser that is specific to Ray assembler amos format
  • Added format functionality for amos classes such that it is easy to convert to different formats
  • Added amos2fastq to pull sequences out of AMOS files organized by their contigs.
  • Added vcfcat.py, a commandline app for filtering and comparing vcf files.
  • Completed documentation for vcfcat
  • Added beast_checkpoint script and documentation
  • Added beast_wrapper script that prints estimated time column in beast output
  • Added beast_est_time script that allows you to easily get estimated time left from already running beast run