plot_muts¶
Example¶
plot_muts --refs tests/testinput/refs.fas --query tests/testinput/query.fas --out plot.png
The --out
option is optional. If it is not provided, the plot will pop up on
the user’s screen automatically. If this does not work, try saving the image using --out
instead.
Example Output¶
Input File Requirements¶
The input must be fasta format. Both the query and ref files can have any number of sequences.
The year should be the last part of the ID, preceded by an underscore. e.g.:
>some|info|blah_blah_1995
>some_1995
If the ID uses ‘/’ rather than underscore, plot_muts currently accepts the year as the fourth field. e.g.:
>some/info/blah/1995
>some/info/blah/1995/more/info